Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015840186.1_cds_XP_016507525.1_20639
CDS Infomation

[gene=LOC107825211] [db_xref=GeneID:107825211] [protein=U-box domain-containing protein 44-like] [protein_id=XP_016507525.1] [location=complement(join(1742..2728,3580..4055,4825..5128,6358..7584))] [gbkey=CDS]
Sequence

ATGCCAGATGTGATTAGTGCTTCTGCTTTAGGTCCATTTGCGGATATCCTCTCTTCAATT
ATAGAGTCCATCATTGAAGTAGTACTTTCTACCAATAATGTCTTTATAGAGAAGAAGAGT
TTTGCAGAACTTTCAGCTTATCTGAATCGAATTGCTCCTCTTCTTAAGGAGTTTAACAGG
AAGAACATTAATGATTCCAAATGCTGGGAAAATGTTTTAGAAATTCTTAACCGACAGATA
GTGGATGCAAGGCAACTAATCTCGGATTGCAGTAAGAAAAACAAGGTCTATCTCTTAATG
AGTTGTCGATCTATTGCAAAGCGCATAGAGAATATCACCAGGGAAATTAGCCGTGCATTA
ACTTGCATTCCTTTAGCTTCTCTTGACGTTTCTTCGGGTATAAAGGAAGAGATTGTCCAG
CTGATCGACAGCATGCGTACAGCAGAATTTAGAGCAGCCATAGCAGAAGAAGAGATTTTA
GAGAAGATAGAGTCGGGTATACAACAGAGAAATGTTGATCGCTCCTATGCCAACAATTTG
TTAGTTTTAATTGCGGAGGCCGTTGGCGTTTCAACTGAAAGCTCAGCTTTAAGAAGAGAA
TTTGAAGATTTCAAAAATGAAATAGACAATGCACGGTTAAGGAAAGATCAAGCTGAAGCC
TTGCAGATGGACCAAATAATTGCTCTGCTAGAAAGAGCAGATGCTGCAACATCCCGCCAG
GAAAAAGAAAAGAAGTACTTCACTAAGCGGAAATCGTTGGGCAGTCAACCTTTGGAGCCA
CTTCTGTCGTTTTATTGCCCTATCACTCGTGAGGTTATGACTGATCCTGTTGAGACTCCT
TCAGGGCATACATTTGAAAGGAGTGCAATAGAGAAGTGGTTGGCAGAGGGAAATTTGTGT
CCTATGACATCTACTCCTTTAAACAATACAATGTTGCGGCCTAATAAAACTCTGCGGCAG
TCAATTGAGGAATGGAAAGACCGAAATACAATGATTACTATCGCTTCCATGAAATTGAAA
CTATCATCCACCGAAGAGGAAGAAGTTCTCAATTACCTGGAACAGCTAAGAGATCTCAGC
GAGCAGAGAGAAATACACCGAGAATGGGTTATTATGGAGGACTATATTCCTATTCTAATC
AAGCTACTGTGTTCAAAAAGTAGGGATATCAGGAATCTTGTTCTTGAGGTGCTCTGCGTT
TTAGCAAAGGATGGTGATGATGCTAAGGAAAGAATTGCTGAAGTTGACAAATCATTGGAA
TCTATTGTCCACTCACTTGGACGACGCATTGGCGAAAGGAAGTCATCGGTGGCATTGTTA
CTGGAACTGTCAAATTGTAAGTCAGTTCAGGAGTCCATTGGGAAAGTTCAAGGTTGCATA
CTTCTGTTAGTTACTATGTCAACCTGTGATGACAACAAAGCCGCCAAAGATGCAAGGGAA
GTTTTGGAGAACATTTCATTTTCTGATGACAATGTTATCCTGATGGCCAAGGCTAACTAT
TTCAAGTACTTGTTGCAACGTCTTTCTTCAGGATCCGGTGATGTGAAGCTCCGAATGGCA
AAGACTTTAGGAGAGATGGAGTTGACAGATCATAATAAGTCATCTCTAATTGAGGAGGGA
GTTCTATATTCCCTTCTTCCCTTGCTGTCACATGGTGAAATTGAAGTGAAACAAGCTGGC
GTCAAAGCCCTTCTAAACCTCTCTAGTTTACCAAAGAATGGACAGGAGATGATCAGACAA
GGTGTTATGCGTCCACTGCTTGATATGTTGTACCGTCACTCATCTTCCCAAAGTCTGCGG
GAACTTGTAGCAGCCACTATCACAAATCTTGCCTTCTCTGCAAACAGTGAAACACAGGTT
TCACTGCTTGATACTGATGAAGACATTTTTGAACTTTTTTCCGTAGTTAACTTGAGTGGC
CCAGCTGTGCAGCAAAGCATTCTCCAGGCTTTCTACGCCATGTGCAAGTCTCCGTTTGCC
GCTAGTGTCAAGGCCAAGCTAGCACAGTGCTCAGCTGTCCAAGTGCTAGTGCAATTCTGT
GAGCATGGAAATTCAGATGTACGGTCAGATGCACTCAAATTATTCTGTTGCTTGATTGAA
AATGCTGATGAAGCTATGATCCAGGAGCACGTGGAACAAAAGTTCATCGAAACATTACTC
AAGATCATCAAGACTTCTCAGGACGAAGAAGAGATTGCTTCTGCAATGGGGATTATCTCT
AACCTTCCCAAATCTCCTCAACTCTCTGAGTGGCTTTTTGCAGCGGAAGGACTTCCAATC
ATTTTCAGCTTTCTTCCCGAGGTAAAGCGTAAGAATCCCTGTAAGCTTCAATTGGTAGAA
AATGCTGCTGGGGCATTATGCCATTTCACAGTCTCAATAAACCAGCAAACACAGAAGATA
GCTGGCATTGTCCCCAAGCTAGTACGGCTGCTAGACGTAGGAACAAGCTTGGCAAAAGAA
CGAGCTGCAATTTCTCTTGCACAGCTCTCAGAGAATTCACAAACACTGAGTCGCCCAATC
CCAAAGCGTCGGGGATTATGGTGCTTCTCAGCTGCACAAGTAGAACTTTGCCCTGTTCAC
CGAGGGATATGCACACTAGAAACTTCGTTTTGTTTGATAGAGGCTGGTGCAGTGGGACCT
CTGGTGAGGGTTCTTGCGGATCCAGATCCTGGAGCCTGTGAAGCTTCTTTAGATGCCTTA
TTGACTTTGATTAGGGATGAAAAACTTCAAAATGGCGCGAAAGTTCTTGCTGAAGAAAAT
GCCATACCATCAATGATAAAACTACTAGATAGTCCTTCCACCAGACTGCAACAAAAGGTT
CTGAATTCATTAGAAAGAATTTTTCGGTTGCTGGAATACAAGCAGAAGTATGGATCCTCT
GCTCAGATGCCCTTAGTTGACTTGACACAACGCGGAAGTAGCAACATCAAATCTTTAGCA
GCAAAGGTACTTGCTCAGTTGAATGTGCTTCATGATCAGTCCTCTTACTTCTAG

Peptide Sequence

PEP ID

XP_016507525.1
PEP Infomation

PREDICTED: U-box domain-containing protein 44-like [Nicotiana tabacum]
Sequence

MPDVISASALGPFADILSSIIESIIEVVLSTNNVFIEKKSFAELSAYLNRIAPLLKEFNR
KNINDSKCWENVLEILNRQIVDARQLISDCSKKNKVYLLMSCRSIAKRIENITREISRAL
TCIPLASLDVSSGIKEEIVQLIDSMRTAEFRAAIAEEEILEKIESGIQQRNVDRSYANNL
LVLIAEAVGVSTESSALRREFEDFKNEIDNARLRKDQAEALQMDQIIALLERADAATSRQ
EKEKKYFTKRKSLGSQPLEPLLSFYCPITREVMTDPVETPSGHTFERSAIEKWLAEGNLC
PMTSTPLNNTMLRPNKTLRQSIEEWKDRNTMITIASMKLKLSSTEEEEVLNYLEQLRDLS
EQREIHREWVIMEDYIPILIKLLCSKSRDIRNLVLEVLCVLAKDGDDAKERIAEVDKSLE
SIVHSLGRRIGERKSSVALLLELSNCKSVQESIGKVQGCILLLVTMSTCDDNKAAKDARE
VLENISFSDDNVILMAKANYFKYLLQRLSSGSGDVKLRMAKTLGEMELTDHNKSSLIEEG
VLYSLLPLLSHGEIEVKQAGVKALLNLSSLPKNGQEMIRQGVMRPLLDMLYRHSSSQSLR
ELVAATITNLAFSANSETQVSLLDTDEDIFELFSVVNLSGPAVQQSILQAFYAMCKSPFA
ASVKAKLAQCSAVQVLVQFCEHGNSDVRSDALKLFCCLIENADEAMIQEHVEQKFIETLL
KIIKTSQDEEEIASAMGIISNLPKSPQLSEWLFAAEGLPIIFSFLPEVKRKNPCKLQLVE
NAAGALCHFTVSINQQTQKIAGIVPKLVRLLDVGTSLAKERAAISLAQLSENSQTLSRPI
PKRRGLWCFSAAQVELCPVHRGICTLETSFCLIEAGAVGPLVRVLADPDPGACEASLDAL
LTLIRDEKLQNGAKVLAEENAIPSMIKLLDSPSTRLQQKVLNSLERIFRLLEYKQKYGSS
AQMPLVDLTQRGSSNIKSLAAKVLAQLNVLHDQSSYF

Transcript Sequence

Gene sequence data has not been registered.